If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ), 'gf_id' => 'HOM05D000709', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000709' ), 'data_identifier' => 'HOM05D000709', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000709', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '810', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08780' => 'bna', 'A01p09440' => 'bna', 'A03p06640' => 'bna', 'A03p58170' => 'bna', 'A03p58190' => 'bna', 'A03p58850' => 'bna', 'A05p39290' => 'bna', 'A07p11190' => 'bna', 'A07p12680' => 'bna', 'A09p37600' => 'bna', 'A09p39660' => 'bna', 'A10p13990' => 'bna', 'Aa31LG2G21210' => 'aar', 'Aa31LG2G21920' => 'aar', 'Aa31LG3G12480' => 'aar', 'Aa31LG5G10750' => 'aar', 'Aa31sc1964G10' => 'aar', 'Aa31sc276G70' => 'aar', 'Actinidia05659' => 'ach', 'Actinidia10995' => 'ach', 'Actinidia11115' => 'ach', 'Actinidia13674' => 'ach', 'Actinidia14852' => 'ach', 'Actinidia16574' => 'ach', 'Actinidia16618' => 'ach', 'Actinidia17503' => 'ach', 'Actinidia33346' => 'ach', 'Actinidia35777' => 'ach', 'Actinidia37358' => 'ach', 'Actinidia38391' => 'ach', 'Actinidia39768' => 'ach', 'Ah.03g137940' => 'amhyb', 'Ah.05g178850' => 'amhyb', 'Ah.09g230360' => 'amhyb', 'Ah.09g237650' => 'amhyb', 'Ah.14g083440' => 'amhyb', 'AL1G39720' => 'aly', 'AL1G42080' => 'aly', 'AL3G10550' => 'aly', 'AL6G25230' => 'aly', 'AL7G23230' => 'aly', 'AL7G24050' => 'aly', 'AL8G32440' => 'aly', 'Aqoxy1G02285' => 'aox', 'Aqoxy282s002' => 'aox', 'Aqoxy282s003' => 'aox', 'Aqoxy3G01235' => 'aox', 'Aqoxy3G03907' => 'aox', 'Aqoxy4G00605' => 'aox', 'Aqoxy7G01369' => 'aox', 'arahy.Tifrunner.gnm1.ann1.13C0EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24LKGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J37F0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.919QYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9732XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEF3I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FD63AG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3FV2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHHH6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K4491K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QL5RCW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T50ENK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5AJQY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCK419' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UX5JN7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6VDUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9YDBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMHS8A' => 'arhy', 'AT1G25580' => 'ath', 'AT1G28470' => 'ath', 'AT3G01600' => 'ath', 'AT4G28500' => 'ath', 'AT4G29230' => 'ath', 'AT5G14490' => 'ath', 'AT5G56620' => 'ath', 'ATR0602G173' => 'atr', 'ATR0753G113' => 'atr', 'ATR0824G031' => 'atr', 'ATR0824G174' => 'atr', 'ATR0963G001' => 'atr', 'Atru.chr10.1783' => 'acertr', 'Atru.chr11.1354' => 'acertr', 'Atru.chr6.2420' => 'acertr', 'Atru.chr6.2865' => 'acertr', 'Atru.chr7.1496' => 'acertr', 'AUR62002922' => 'cqu', 'AUR62004572' => 'cqu', 'AUR62014879' => 'cqu', 'AUR62021364' => 'cqu', 'AUR62022685' => 'cqu', 'AUR62026259' => 'cqu', 'AUR62031086' => 'cqu', 'AUR62033276' => 'cqu', 'AUR62035283' => 'cqu', 'AUR62036063' => 'cqu', 'AUR62043434' => 'cqu', 'BcaB01g06370' => 'bca', 'BcaB03g13926' => 'bca', 'BcaB03g14052' => 'bca', 'BcaB07g32465' => 'bca', 'BcaB08g36073' => 'bca', 'BcaC01g02660' => 'bca', 'BcaC01g04528' => 'bca', 'BcaC03g17780' => 'bca', 'BcaC04g20067' => 'bca', 'BcaC05g26436' => 'bca', 'BcaC05g26650' => 'bca', 'BcaC05g26863' => 'bca', 'BcaC05g27047' => 'bca', 'BcaC05g27528' => 'bca', 'BcaC06g31650' => 'bca', 'BcaC06g32615' => 'bca', 'BcaC06g35188' => 'bca', 'BcaC06g35371' => 'bca', 'BcaC09g51652' => 'bca', 'BcaC09g51710' => 'bca', 'BcaNung00470' => 'bca', 'BcaNung01320' => 'bca', 'BcaNung01324' => 'bca', 'BcaNung06365' => 'bca', 'BolC1t00987H' => 'bol', 'BolC1t01061H' => 'bol', 'BolC2t11877H' => 'bol', 'BolC3t13267H' => 'bol', 'BolC3t18486H' => 'bol', 'BolC5t31215H' => 'bol', 'BolC5t31463H' => 'bol', 'BolC5t31636H' => 'bol', 'BolC5t32226H' => 'bol', 'BolC7t42192H' => 'bol', 'BolC7t42397H' => 'bol', 'BolC7t46105H' => 'bol', 'BolC7t46159H' => 'bol', 'BolC9t57673H' => 'bol', 'BraA01t00828Z' => 'bra', 'BraA01t00886Z' => 'bra', 'BraA03t09998Z' => 'bra', 'BraA03t14883Z' => 'bra', 'BraA03t14886Z' => 'bra', 'BraA03t14945Z' => 'bra', 'BraA07t28909Z' => 'bra', 'BraA09t39270Z' => 'bra', 'BraA09t39462Z' => 'bra', 'BraA10t43490Z' => 'bra', 'C01p10310' => 'bna', 'C01p10990' => 'bna', 'C02p58050' => 'bna', 'C03p07670' => 'bna', 'C03p62240' => 'bna', 'C05p24860' => 'bna', 'C05p27450' => 'bna', 'C05p35060' => 'bna', 'C07p16860' => 'bna', 'C07p18870' => 'bna', 'C07p56270' => 'bna', 'C07p56800' => 'bna', 'C08p08500' => 'bna', 'C09p48230' => 'bna', 'CAN.G1808.2' => 'can', 'CAN.G184.90' => 'can', 'CAN.G44.8' => 'can', 'CAN.G473.18' => 'can', 'CAN.G529.61' => 'can', 'CANSAT35G0528' => 'cansat', 'CANSAT56G2184' => 'cansat', 'CANSAT64G0479' => 'cansat', 'CANSAT64G0607' => 'cansat', 'CANSAT64G0846' => 'cansat', 'CARHR025860' => 'chi', 'CARHR027950' => 'chi', 'CARHR075320' => 'chi', 'CARHR152790' => 'chi', 'CARHR198820' => 'chi', 'CARHR236280' => 'chi', 'CARHR236990' => 'chi', 'CARHR270310' => 'chi', 'Carub.0001s2490' => 'cru', 'Carub.0001s2693' => 'cru', 'Carub.0003s0046' => 'cru', 'Carub.0006s1267' => 'cru', 'Carub.0007s1137' => 'cru', 'Carub.0007s1218' => 'cru', 'Carub.0008s1710' => 'cru', 'Ca_05085_v3' => 'car', 'Ca_13563_v3' => 'car', 'Ca_17376_v3' => 'car', 'Ca_17937_v3' => 'car', 'Ca_18597_v3' => 'car', 'Ca_18918_v3' => 'car', 'Cc02_g13910' => 'ccan', 'Cc05_g07770' => 'ccan', 'Cc06_g10730' => 'ccan', 'Cc07_g01550' => 'ccan', 'Cc11_g10610' => 'ccan', 'CDE05G0338' => 'cde', 'CDE05G1113' => 'cde', 'CDE08G1683' => 'cde', 'CDE10G0092' => 'cde', 'CDE10G1104' => 'cde', 'CDE11G0404' => 'cde', 'CDE11G0448' => 'cde', 'CDE11G0625' => 'cde', 'Cfa000534' => 'cfa', 'Cfa003154' => 'cfa', 'Ciclev10010579m.g' => 'ccl', 'Ciclev10015507m.g' => 'ccl', 'Ciclev10015976m.g' => 'ccl', 'Ciclev10017822m.g' => 'ccl', 'Ciclev10031598m.g' => 'ccl', 'CiPaw.03G045200' => 'cil', 'CiPaw.03G182100' => 'cil', 'CiPaw.03G221500' => 'cil', 'CiPaw.04G029400' => 'cil', 'CiPaw.04G129200' => 'cil', 'CiPaw.04G154400' => 'cil', 'CiPaw.04G154500' => 'cil', 'CiPaw.09G064100' => 'cil', 'CiPaw.10G053100' => 'cil', 'CiPaw.15G003500' => 'cil', 'ClCG00G002780' => 'cla', 'ClCG01G023310' => 'cla', 'ClCG02G010340' => 'cla', 'ClCG03G007980' => 'cla', 'ClCG03G016000' => 'cla', 'ClCG05G023020' => 'cla', 'ClCG09G019340' => 'cla', 'ClCG11G001970' => 'cla', 'COL.COLO4_03610' => 'col', 'COL.COLO4_07867' => 'col', 'COL.COLO4_18277' => 'col', 'COL.COLO4_29168' => 'col', 'COL.COLO4_31409' => 'col', 'Cpa.g.sc2586.1' => 'cpa', 'Cpa.g.sc2900.2' => 'cpa', 'Cpa.g.sc53.116' => 'cpa', 'Cpa.g.sc78.40' => 'cpa', 'Cpa.g.sc83.99' => 'cpa', 'CsaV3_1G012610' => 'csa', 'CsaV3_1G039960' => 'csa', 'CsaV3_2G001710' => 'csa', 'CsaV3_2G034460' => 'csa', 'CsaV3_5G027070' => 'csa', 'CsaV3_5G033980' => 'csa', 'CsaV3_6G050450' => 'csa', 'CSS0007516' => 'camsi', 'CSS0009533' => 'camsi', 'CSS0011167' => 'camsi', 'CSS0011587' => 'camsi', 'CSS0012182' => 'camsi', 'CSS0014040' => 'camsi', 'CSS0016712' => 'camsi', 'CSS0024471' => 'camsi', 'CSS0037976' => 'camsi', 'CSS0041233' => 'camsi', 'CSS0043027' => 'camsi', 'CSS0044968' => 'camsi', 'CSS0047573' => 'camsi', 'DCAR_011258' => 'dca', 'DCAR_011259' => 'dca', 'DCAR_012021' => 'dca', 'DCAR_021266' => 'dca', 'DCAR_021729' => 'dca', 'DCAR_023688' => 'dca', 'DCAR_028042' => 'dca', 'DCAR_028641' => 'dca', 'DCAR_028642' => 'dca', 'Dinv06854' => 'din', 'Dinv16506' => 'din', 'Dinv17361' => 'din', 'Dinv21134' => 'din', 'Dinv25729' => 'din', 'Dinv33430' => 'din', 'Dinv36711' => 'din', 'Dinv40606' => 'din', 'Dinv42269' => 'din', 'Duzib052G1051' => 'dzi', 'Duzib132G1127' => 'dzi', 'Duzib147G1358' => 'dzi', 'Duzib150G0331' => 'dzi', 'Duzib160G0475' => 'dzi', 'Duzib168G0980' => 'dzi', 'Duzib187G0744' => 'dzi', 'Duzib187G1199' => 'dzi', 'Duzib192G0820' => 'dzi', 'Duzib235G0648' => 'dzi', 'Duzib248G0470' => 'dzi', 'Duzib251G0863' => 'dzi', 'Duzib264G0107' => 'dzi', 'ECA234G2604' => 'eca', 'ECA236G0041' => 'eca', 'ECA238G2453' => 'eca', 'ECA246G2234' => 'eca', 'ECA246G4459' => 'eca', 'EL10Ac1g00168' => 'bvu', 'EL10Ac6g14495' => 'bvu', 'EL10Ac8g18350' => 'bvu', 'EL10Ac8g20444' => 'bvu', 'EL10Ac9g20822' => 'bvu', 'Eucgr.C00958' => 'egr', 'Eucgr.D00591' => 'egr', 'Eucgr.D00592' => 'egr', 'Eucgr.D00593' => 'egr', 'Eucgr.D00594' => 'egr', 'Eucgr.D00595' => 'egr', 'Eucgr.E03226' => 'egr', 'Eucgr.G02349' => 'egr', 'Eucgr.J02254' => 'egr', 'Eucgr.K01061' => 'egr', 'FAN02G0930' => 'fan', 'FAN02G2410' => 'fan', 'FAN05G4233' => 'fan', 'FAN05G5047' => 'fan', 'FAN07G0271' => 'fan', 'FAN09G1394' => 'fan', 'FAN09G2680' => 'fan', 'FAN11G0017' => 'fan', 'FAN12G0115' => 'fan', 'FAN14G2395' => 'fan', 'FAN14G2759' => 'fan', 'FAN17G2510' => 'fan', 'FAN19G1326' => 'fan', 'FAN21G2047' => 'fan', 'FAN22G1336' => 'fan', 'FAN23G2270' => 'fan', 'FAN25G3838' => 'fan', 'FAN26G1548' => 'fan', 'FAN26G2203' => 'fan', 'FAN28G2704' => 'fan', 'FvH4_1g06530' => 'fve', 'FvH4_3g08490' => 'fve', 'FvH4_4g28090' => 'fve', 'FvH4_6g26730' => 'fve', 'FvH4_6g51660' => 'fve', 'Glyma.01G005500' => 'gma', 'Glyma.01G088200' => 'gma', 'Glyma.02G100200' => 'gma', 'Glyma.05G002700' => 'gma', 'Glyma.05G225100' => 'gma', 'Glyma.06G288500' => 'gma', 'Glyma.07G126500' => 'gma', 'Glyma.07G201800' => 'gma', 'Glyma.08G031900' => 'gma', 'Glyma.10G204700' => 'gma', 'Glyma.12G118700' => 'gma', 'Glyma.12G206900' => 'gma', 'Glyma.13G174700' => 'gma', 'Glyma.13G234700' => 'gma', 'Glyma.13G294000' => 'gma', 'Glyma.15G078300' => 'gma', 'Glyma.16G069300' => 'gma', 'Glyma.19G002900' => 'gma', 'Glyma.19G056400' => 'gma', 'Glyma.20G185800' => 'gma', 'Gohir.A05G027000' => 'ghi', 'Gohir.A05G158500' => 'ghi', 'Gohir.A06G068800' => 'ghi', 'Gohir.A06G133404' => 'ghi', 'Gohir.A09G029900' => 'ghi', 'Gohir.A11G066000' => 'ghi', 'Gohir.A12G139400' => 'ghi', 'Gohir.A12G170500' => 'ghi', 'Gohir.D05G028900' => 'ghi', 'Gohir.D05G161100' => 'ghi', 'Gohir.D06G067400' => 'ghi', 'Gohir.D06G135700' => 'ghi', 'Gohir.D09G029600' => 'ghi', 'Gohir.D11G070200' => 'ghi', 'Gohir.D12G143900' => 'ghi', 'Gohir.D12G173700' => 'ghi', 'Gorai.006G034600' => 'gra', 'Gorai.007G075300' => 'gra', 'Gorai.008G155200' => 'gra', 'Gorai.008G186300' => 'gra', 'Gorai.009G028900' => 'gra', 'Gorai.009G166300' => 'gra', 'Gorai.010G078900' => 'gra', 'Gorai.010G157600' => 'gra', 'GSVIVG01011954001' => 'vvi', 'GSVIVG01015274001' => 'vvi', 'GSVIVG01020609001' => 'vvi', 'GSVIVG01021120001' => 'vvi', 'GSVIVG01032388001' => 'vvi', 'HanXRQChr03g0060931' => 'han', 'HanXRQChr04g0116831' => 'han', 'HanXRQChr07g0199011' => 'han', 'HanXRQChr09g0238471' => 'han', 'HanXRQChr10g0318961' => 'han', 'HanXRQChr12g0355191' => 'han', 'HanXRQChr12g0386181' => 'han', 'HanXRQChr14g0451181' => 'han', 'HanXRQChr15g0471111' => 'han', 'HanXRQChr15g0481421' => 'han', 'HanXRQChr16g0519011' => 'han', 'HanXRQChr17g0548601' => 'han', 'HanXRQChr17g0552261' => 'han', 'HanXRQChr17g0565861' => 'han', 'Haze_06367' => 'cav', 'Haze_13251' => 'cav', 'Haze_14755' => 'cav', 'Haze_17441' => 'cav', 'Haze_25848' => 'cav', 'Hma1.2p1_0012F.1_g007490' => 'hma', 'Hma1.2p1_0406F.1_g146040' => 'hma', 'Hma1.2p1_0818F.1_g223250' => 'hma', 'Hma1.2p1_1658F.1_g296060' => 'hma', 'Hma1.2p1_1747F.1_g300510' => 'hma', 'Hma1.2p1_2337F.1_g320223' => 'hma', 'Hma1.2p1_2337F.1_g320226' => 'hma', 'HPP92_003949' => 'vpl', 'HPP92_009976' => 'vpl', 'HPP92_020248' => 'vpl', 'HPP92_023995' => 'vpl', 'HPP92_024274' => 'vpl', 'Hund05768' => 'sun', 'Hund09072' => 'sun', 'Hund12959' => 'sun', 'Hund21149' => 'sun', 'Hund25104' => 'sun', 'Hund26295' => 'sun', 'Lalb_Chr03g0029661' => 'lal', 'Lalb_Chr04g0254941' => 'lal', 'Lalb_Chr05g0223411' => 'lal', 'Lalb_Chr09g0331661' => 'lal', 'Lalb_Chr10g0099731' => 'lal', 'Lalb_Chr14g0362861' => 'lal', 'Lalb_Chr14g0367161' => 'lal', 'Lalb_Chr14g0375201' => 'lal', 'Lalb_Chr16g0384061' => 'lal', 'Lalb_Chr19g0135091' => 'lal', 'Lalb_Chr20g0121521' => 'lal', 'Lalb_Chr24g0394001' => 'lal', 'Lj1A1200G68' => 'lonja', 'Lj1g0014205' => 'lja', 'Lj2g0014687' => 'lja', 'Lj2g0017681' => 'lja', 'Lj2g0020477' => 'lja', 'Lj3A1020T58' => 'lonja', 'Lj3g0013869' => 'lja', 'Lj3g0022278' => 'lja', 'Lj4A369T14' => 'lonja', 'Lj4g0002275' => 'lja', 'Lj4g0022215' => 'lja', 'Lj6g0009620' => 'lja', 'Lj7A600T54' => 'lonja', 'Lj7A668T76' => 'lonja', 'Lj8A107T64' => 'lonja', 'Lsat_1_v5_gn_0_32180' => 'lsa', 'Lsat_1_v5_gn_2_91301' => 'lsa', 'Lsat_1_v5_gn_3_57981' => 'lsa', 'Lsat_1_v5_gn_4_66101' => 'lsa', 'Lsat_1_v5_gn_5_146440' => 'lsa', 'Lsat_1_v5_gn_7_22221' => 'lsa', 'Lsat_1_v5_gn_7_38860' => 'lsa', 'Manes.03G028900' => 'mes', 'Manes.06G072300' => 'mes', 'Manes.12G090500' => 'mes', 'Manes.13G141600' => 'mes', 'Manes.14G097400' => 'mes', 'Manes.15G151500' => 'mes', 'Manes.16G032500' => 'mes', 'Manes.16G106800' => 'mes', 'Manes.17G049900' => 'mes', 'Manes.17G111400' => 'mes', 'Mapoly0086s0046' => 'mpo', 'MBI01_g10301_MAGBIO' => 'mbi', 'MBI04_g06996_MAGBIO' => 'mbi', 'MBI06_g04403_MAGBIO' => 'mbi', 'MBI07_g01329_MAGBIO' => 'mbi', 'MBI10_g03015_MAGBIO' => 'mbi', 'MBI12_g21978_MAGBIO' => 'mbi', 'MD02G1068700' => 'mdo', 'MD05G1309700' => 'mdo', 'MD09G1023600' => 'mdo', 'MD10G1288300' => 'mdo', 'MD13G1046600' => 'mdo', 'MD15G1200200' => 'mdo', 'MD16G1048300' => 'mdo', 'MD17G1023100' => 'mdo', 'Medtr1g093670' => 'mtr', 'Medtr1g093680' => 'mtr', 'Medtr2g014680' => 'mtr', 'Medtr2g014700' => 'mtr', 'Medtr2g090735' => 'mtr', 'Medtr3g022390' => 'mtr', 'Medtr4g078875' => 'mtr', 'Medtr4g078895' => 'mtr', 'Medtr4g088245' => 'mtr', 'Medtr5g053430' => 'mtr', 'Medtr7g033320' => 'mtr', 'Medtr8g069160' => 'mtr', 'Medtr8g102240' => 'mtr', 'MELO3C002628.2' => 'cme', 'MELO3C004604.2' => 'cme', 'MELO3C007255.2' => 'cme', 'MELO3C012215.2' => 'cme', 'MELO3C015427.2' => 'cme', 'MELO3C019332.2' => 'cme', 'MELO3C021587.2' => 'cme', 'Migut.E00298' => 'egut', 'Migut.H01467' => 'egut', 'Migut.K00558' => 'egut', 'Migut.K01409' => 'egut', 'Migut.M01101' => 'egut', 'MSTRG.10592' => 'ama', 'MSTRG.15846' => 'ama', 'MSTRG.24044' => 'ama', 'MSTRG.26398' => 'ama', 'MSTRG.7363' => 'ama', 'MSTRG.7689' => 'ama', 'Nitab4.5_0000012g0090' => 'nta', 'Nitab4.5_0000621g0050' => 'nta', 'Nitab4.5_0001860g0040' => 'nta', 'Nitab4.5_0001955g0020' => 'nta', 'Nitab4.5_0003315g0030' => 'nta', 'Nitab4.5_0003873g0010' => 'nta', 'Nitab4.5_0004122g0040' => 'nta', 'Nitab4.5_0005191g0040' => 'nta', 'Nitab4.5_0006826g0070' => 'nta', 'Nitab4.5_0007082g0010' => 'nta', 'Nitab4.5_0008922g0020' => 'nta', 'Nitab4.5_0010468g0010' => 'nta', 'Nitab4.5_0011178g0010' => 'nta', 'Nn1g04246' => 'nnu', 'Nn1g06403' => 'nnu', 'Nn3g16695' => 'nnu', 'Nn3g17722' => 'nnu', 'Nn4g22597' => 'nnu', 'Nn4g23724' => 'nnu', 'Nn6g35359' => 'nnu', 'Nn8g39021' => 'nnu', 'Oeu000340.1' => 'oeu', 'Oeu021461.1' => 'oeu', 'Oeu027699.1' => 'oeu', 'Oeu036087.1' => 'oeu', 'Oeu041357.2' => 'oeu', 'Oeu041879.2' => 'oeu', 'Oeu042026.1' => 'oeu', 'Oeu044891.1' => 'oeu', 'Oeu048300.1' => 'oeu', 'Oeu048610.1' => 'oeu', 'Os01g0191300' => 'osa', 'Os01g0672100' => 'osa', 'Os02g0594800' => 'osa', 'Os04g0477300' => 'osa', 'Os05g0194500' => 'osa', 'Os05g0563000' => 'osa', 'Os06g0267500' => 'osa', 'Os06g0560300' => 'osa', 'Peaxi162Scf00099g00076' => 'pax', 'Peaxi162Scf00129g01666' => 'pax', 'Peaxi162Scf00248g01414' => 'pax', 'Peaxi162Scf00298g00105' => 'pax', 'Peaxi162Scf00380g00219' => 'pax', 'Peaxi162Scf00490g00310' => 'pax', 'Peaxi162Scf00845g00010' => 'pax', 'Peaxi162Scf00944g00154' => 'pax', 'PGR004G0194' => 'pgr', 'PGR004G1557' => 'pgr', 'PGR004G2479' => 'pgr', 'PGR004G2826' => 'pgr', 'PGR042G0414' => 'pgr', 'PGR119G0617' => 'pgr', 'PGR142G1519' => 'pgr', 'PGR142G2071' => 'pgr', 'PGR142G2852' => 'pgr', 'PGSC0003DMG400000809' => 'stu', 'PGSC0003DMG400009381' => 'stu', 'PGSC0003DMG400012607' => 'stu', 'PGSC0003DMG400016896' => 'stu', 'PGSC0003DMG400031753' => 'stu', 'Phvul.002G307000' => 'pvu', 'Phvul.002G328700' => 'pvu', 'Phvul.003G027100' => 'pvu', 'Phvul.004G004900' => 'pvu', 'Phvul.004G174000' => 'pvu', 'Phvul.005G100100' => 'pvu', 'Phvul.006G181500' => 'pvu', 'Phvul.008G159200' => 'pvu', 'Potri.001G343800' => 'ptr', 'Potri.004G049300' => 'ptr', 'Potri.006G152700' => 'ptr', 'Potri.007G135300' => 'ptr', 'Potri.008G116600' => 'ptr', 'Potri.010G129700' => 'ptr', 'Potri.011G058400' => 'ptr', 'Potri.017G016700' => 'ptr', 'Potri.018G068700' => 'ptr', 'Pp3c19_1580' => 'ppa', 'Pp3c22_130' => 'ppa', 'Prupe.1G305300' => 'ppe', 'Prupe.3G293200' => 'ppe', 'Prupe.4G053300' => 'ppe', 'Prupe.7G217000' => 'ppe', 'Psat0s2763g0040' => 'psa', 'Psat0s2980g0040' => 'psa', 'Psat0s7160g0040' => 'psa', 'Psat1g202400' => 'psa', 'Psat3g033840' => 'psa', 'Psat3g183680' => 'psa', 'Psat5g273920' => 'psa', 'Psat6g101240' => 'psa', 'Psat6g178440' => 'psa', 'Psat6g217160' => 'psa', 'Psat7g018400' => 'psa', 'Psat7g116600' => 'psa', 'Psat7g167720' => 'psa', 'PSO017G5550' => 'pso', 'PSO063G2788' => 'pso', 'PSO063G7345' => 'pso', 'PSO210G2290' => 'pso', 'PSO478G1638' => 'pso', 'PSO541G5334' => 'pso', 'PSO675G1105' => 'pso', 'PSO782G4918' => 'pso', 'PSO832G2958' => 'pso', 'PSO832G3704' => 'pso', 'QL01p045366' => 'qlo', 'QL02p040552' => 'qlo', 'QL02p074118' => 'qlo', 'QL05p042877' => 'qlo', 'QL05p042936' => 'qlo', 'QL05p042979' => 'qlo', 'QL08p015114' => 'qlo', 'QL08p040401' => 'qlo', 'RcHm_v2.0_Chr0c19g0500091' => 'rch', 'RcHm_v2.0_Chr2g0092281' => 'rch', 'RcHm_v2.0_Chr2g0173191' => 'rch', 'RcHm_v2.0_Chr4g0435841' => 'rch', 'RcHm_v2.0_Chr5g0009331' => 'rch', 'Rhsim03G0236000' => 'rsi', 'Rhsim05G0029200' => 'rsi', 'Rhsim06G0136300' => 'rsi', 'Rhsim08G0048500' => 'rsi', 'Rhsim09G0112100' => 'rsi', 'Rhsim09G0112400' => 'rsi', 'Rhsim10G0014900' => 'rsi', 'Rhsim12G0081600' => 'rsi', 'Sabra06G0120900' => 'sbr', 'Sabra07G0109600' => 'sbr', 'Sabra08G0088400' => 'sbr', 'Sabra10G0098700' => 'sbr', 'Sabra11G0040500' => 'sbr', 'Sabra16G0223100' => 'sbr', 'Sabra17G0012900' => 'sbr', 'Sabra18G0060700' => 'sbr', 'SalBow1G2586' => 'sbo', 'SalBow7G0310' => 'sbo', 'SalBow7G1836' => 'sbo', 'SalBow7G2204' => 'sbo', 'SalBow8G2415' => 'sbo', 'SalBow8G4790' => 'sbo', 'Sc04g0006690' => 'sci', 'Sc04g0006730' => 'sci', 'Sc08g0008120' => 'sci', 'Sc12g0003240' => 'sci', 'Sc16g0004360' => 'sci', 'Sc17g0005900' => 'sci', 'Sc18g0001620' => 'sci', 'Sed0000898' => 'sed', 'Sed0004644' => 'sed', 'Sed0006366' => 'sed', 'Sed0007126' => 'sed', 'Sed0012914' => 'sed', 'Sed0013338' => 'sed', 'Sed0014697' => 'sed', 'Sed0020682' => 'sed', 'Sed0021739' => 'sed', 'Sed0023710' => 'sed', 'Sed0023781' => 'sed', 'Sed0023923' => 'sed', 'Sed0025811' => 'sed', 'Sed0026168' => 'sed', 'SEGI_04481' => 'sgi', 'SEGI_05444' => 'sgi', 'SEGI_18299' => 'sgi', 'SEGI_22184' => 'sgi', 'SEGI_26026' => 'sgi', 'SEGI_29285' => 'sgi', 'SEGI_30821' => 'sgi', 'SEGI_32083' => 'sgi', 'SGA_v2.0_scaffold14G06821' => 'sas', 'SGA_v2.0_scaffold16G07642' => 'sas', 'SGA_v2.0_scaffold19G08697' => 'sas', 'SGA_v2.0_scaffold309G48174' => 'sas', 'SGA_v2.0_scaffold30G12412' => 'sas', 'SGA_v2.0_scaffold47G17505' => 'sas', 'SHI02771' => 'shi', 'SHI16402' => 'shi', 'SMO119G0219' => 'smo', 'Solyc02g077610.3' => 'sly', 'Solyc02g093420.4' => 'sly', 'Solyc05g009840.3' => 'sly', 'Solyc05g026180.2' => 'sly', 'Solyc07g053590.4' => 'sly', 'Sopen02g022510' => 'spe', 'Sopen02g038010' => 'spe', 'Sopen05g005650' => 'spe', 'Sopen05g022420' => 'spe', 'Sopen07g027540' => 'spe', 'Sp1g22630' => 'spa', 'Sp1g24720' => 'spa', 'Sp3g00450' => 'spa', 'Sp6g18400' => 'spa', 'Sp6g29520' => 'spa', 'Sp7g26480' => 'spa', 'Sp7g27160' => 'spa', 'SpUn0685_0010' => 'spa', 'TAR371G0746' => 'tar', 'TAR371G1112' => 'tar', 'TAR374G1466' => 'tar', 'TAR622G0092' => 'tar', 'TAR622G0122' => 'tar', 'TAR622G0896' => 'tar', 'TAR624G0060' => 'tar', 'TAR624G0636' => 'tar', 'TAR626G0326' => 'tar', 'TAR626G0569' => 'tar', 'TAR627G0528' => 'tar', 'TAR627G0804' => 'tar', 'TAR629G0185' => 'tar', 'TAR629G0357' => 'tar', 'TAR629G0673' => 'tar', 'TAR629G1111' => 'tar', 'TAR636G1273' => 'tar', 'TAR636G2970' => 'tar', 'THA.LOC104801756' => 'tha', 'THA.LOC104803078' => 'tha', 'THA.LOC104803997' => 'tha', 'THA.LOC104804048' => 'tha', 'THA.LOC104814586' => 'tha', 'THA.LOC104817742' => 'tha', 'THA.LOC104820573' => 'tha', 'THA.LOC104821092' => 'tha', 'THA.LOC104821963' => 'tha', 'Thecc.02G186900' => 'tca', 'Thecc.02G361300' => 'tca', 'Thecc.04G018900' => 'tca', 'Thecc.06G180300' => 'tca', 'Thecc.09G097300' => 'tca', 'Thhalv10007551m.g' => 'esa', 'Thhalv10008249m.g' => 'esa', 'Thhalv10015728m.g' => 'esa', 'Thhalv10015892m.g' => 'esa', 'Thhalv10022099m.g' => 'esa', 'Thhalv10024980m.g' => 'esa', 'Thhalv10025819m.g' => 'esa', 'TPR.G10962' => 'tpr', 'TPR.G11056' => 'tpr', 'TPR.G1138' => 'tpr', 'TPR.G14244' => 'tpr', 'TPR.G18702' => 'tpr', 'TPR.G23500' => 'tpr', 'TPR.G2657' => 'tpr', 'TPR.G27866' => 'tpr', 'TPR.G31874' => 'tpr', 'TPR.G35919' => 'tpr', 'TPR.G40083' => 'tpr', 'TPR.G6461' => 'tpr', 'TWI12G1062' => 'twi', 'TWI14G1043' => 'twi', 'TWI31G0592' => 'twi', 'TWI32G0647' => 'twi', 'TWI34G1480' => 'twi', 'TWI36G0988' => 'twi', 'TWI38G0465' => 'twi', 'TWI38G1865' => 'twi', 'TWI56G0359' => 'twi', 'TWI59G1204' => 'twi', 'TWI63G1695' => 'twi', 'unitig_0.g2541' => 'ugi', 'unitig_22.g5565' => 'ugi', 'unitig_744.g24041' => 'ugi', 'unitig_748.g8692' => 'ugi', 'unitig_88.g27665' => 'ugi', 'vmacro01365' => 'vma', 'vmacro03902' => 'vma', 'vmacro05873' => 'vma', 'vmacro10529' => 'vma', 'vmacro10833' => 'vma', 'vmacro12349' => 'vma', 'vmacro18292' => 'vma', 'VMungo0251G2598' => 'vmu', 'VMungo0251G2927' => 'vmu', 'VMungo0464G1772' => 'vmu', 'VMungo0464G2016' => 'vmu', 'VMungo0540G0814' => 'vmu', 'VMungo0540G1136' => 'vmu', 'VMungo1080G1311' => 'vmu', 'VMungo1127G1412' => 'vmu', 'VMungo1215G2333' => 'vmu', 'VMungo1383G0049' => 'vmu', 'Zm00001eb008350' => 'zma', 'Zm00001eb037590' => 'zma', 'Zm00001eb067360' => 'zma', 'Zm00001eb079630' => 'zma', 'Zm00001eb121380' => 'zma', 'Zm00001eb157260' => 'zma', 'Zm00001eb183700' => 'zma', 'Zm00001eb246010' => 'zma', 'Zm00001eb280480' => 'zma', 'Zm00001eb280490' => 'zma', 'Zm00001eb295810' => 'zma', 'Zm00001eb308090' => 'zma', 'Zm00001eb337360' => 'zma', 'Zm00001eb337530' => 'zma', 'Zm00001eb345820' => 'zma', 'Zm00001eb359950' => 'zma', 'Zm00001eb384320' => 'zma', 'Zm00001eb399930' => 'zma', 'Zm00001eb424870' => 'zma' ) $gf_id = 'HOM05D000709' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000709' ) $data_identifier = 'HOM05D000709' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 9, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 18, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 11, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1